Skip to content

FAQs#

How can I add my gene signatures in the scRNA pipeline?#

Answer

Yes. A user can easily add markers into cell annotation database. Additionally, the user can contribute to cell annotation database by adding markers into the collections sheet.

Can I use a custom genome on the pipeline?#

Answer

Although not recommented for standards reasons. It is possible to add a custom genome at the Alignament step. Please, check the Advanced configurations for more explanation.

Does the pipeline supports data generated by distinct protocols (e.g. scFPPE, snRNA-Seq, etc)?#

Answer

Currently, the pipeline is designed to support libraries derived from fresh-frozen samples. However, we will prioritize adapting the pipeline for FPPE-based samples and snRNA-Seq.

Got more questions? Please, send an email to affaustino@mdanderson.org. We're here to help!